Single Nucleotide Polymorphisms

Data referred to Single Nucletide Polymorphism (SNP) are available on the 'net

Database

WEB address

A database of single nucleotide polymorphisms (Tokyo, Japan)

http://snp.ims.u-tokyo.ac.jp

The human gene mutation database at the Institute of Medical Genetics in Cardiff (U.K.)

http://archive.uwcm.ac.uk/uwcm/mg/ hgmd0.html

The Allele Frequency Database (ALFRED) from Kidd Lab, Yale University (U.S.A.)

http://alfred.med.yale.edu/alfred

EMBL - European Bioinformatics Institute (SNP-Fasta3) (Germany)

http://www.ebi.ac.uk/snpfasta3

The SNP Consortium Ltd. - Single Nucleotide Polymorphisms for Biomedical Research

http://snp.cshl.org

Human Genic B i-Allelic Sequences (HGBASE) (Sweden, U.K., Germany)

http://hgbase.interactiva.de

Human SNP Database

http://waldo.wi.mit.edu/SNP/human

NCBI - Single Nucleotide Polymorphism

http://www.ncbi.nlm.nih.gov/SNP

Reference:

"Find SNPs Online" by Julia Boguslavsky, Drug Discovery & Development 4 , 67 - 68 (2001)

"A map of human genome sequence variation containing 1.4 million SNPs", Nature 409, 928 - 933 (2001)

How single nucleotide polymorphisms (SNPs) can be used to understand disease and predict drug response

Companies involved

Name

Web address

Genaissance Pharmaceuticals

www.genaissance.com

GlaxoSmithKline

www.gsk.com

Incyte Genomics

www.incyte.com

Perlegen Sciences

www.perlegen.com

PolyGenyx

www.polygenyx.com

Variagenics

www.variagenics.com

Whitehead Institute

www.genome.wi.mit.edu

Reference:

"Linking variation to disease and response genes" by Malorye A. Branca, Drug Discovery & Development 5, 47 - 50 (2002)

Single Nucleotide polymorphism

This picture is provided courtesy of the U.S. Department of Energy Human Genome Program. [The U.S. Department of Energy Human Genome Program and their website, http://www.ornl.gov/hgmis ]

SNPs

BIODEFENSE

Microarray-based methods for detecting genomic diversity among pathogens

Chips-N-SNPs

(developed by Scott A. Jackson, Food and Drug Administration, U.S.A.)